Creating an Rsearch object (list) from a phyloseq object.
Usage
phyloseq2rsearch(phyloseq.obj)
Arguments
- phyloseq.obj
(Required). A phyloseq object, see phyloseq.
Value
A list with entries as in a Rsearch object, except that the
sequence.tbl do not contain sequences, only taxonomy.
Details
This function converts a phyloseq object to a simple
list with three elements as dataframes (or tibbles). The
entries are named according to the structure used in
rsearch_obj
Examples
if (FALSE) { # \dontrun{
# Convert phyloseq object to Rsearch object
rsearch_obj <- phyloseq2rsearch(phy_obj)
# Extract read count data
rsearch_obj$readcount.mat
# Extract sample data
rsearch_obj$sampledata.df
# Extract sequence data
rsearch_obj$sequence.df
} # }